PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG215000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 367aa    MW: 39685.9 Da    PI: 6.8883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG215000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41e-07172214754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + E++RR r+ +++  L  l+P++     +K + a++   A+eYI++L
  Pavir.5KG215000.1.p 172 KKEKQRRLRLTEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 214
                          57*********************9.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.34165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-4171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5172214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-5174214No hitNo description
SuperFamilySSF474592.49E-9174237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYHPQCELLM AHESRDLDAG QPHLHASAGV AAIPTELSFH LLHSLDAAAA ISSVTPQPTI  60
DYFFGAAADS HQPAVQYEPL PPTHQQHTMN MLRDYCNGVG HYAAAAEPYL RGARTGALVF  120
GATDDESAAA YMPAGPFESS PPPRPTGGRK RSRALMSGGG FHGGPGNGGV EKKEKQRRLR  180
LTEKYTALML LIPNRTKDDR ATVISDAIEY IQELGRTVEE LTLLVGKKRR RMELQGDVVD  240
AAPAVAVPAA GEAESSEGEV APPPPPAAQQ RQPIRSTYIQ RRSKDTSVDV RIVEEDVNIK  300
LTKRRRDGCL AAASRALDDL RLDLVHLSGG KIGDCHIYMF NTKIHPSSPV FASAVASRLM  360
EVVDEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153GRKRSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967599.10.0PREDICTED: transcription factor TIP2-like
SwissprotQ5JNS01e-157TIP2_ORYSJ; Transcription factor TIP2
TrEMBLK3XQC30.0K3XQC3_SETIT; Uncharacterized protein
STRINGSi004106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-26bHLH family protein